Resources

2020

Genetic identification of cell types underlying brain complex traits yields insights into the etiology of Parkinson’s disease.
Bryois J, Skene NG, Hansen TF, Kogelman LJA, Watson HJ, Liu Z; Eating Disorders Working Group of the Psychiatric Genomics Consortium; International Headache Genetics Consortium; 23andMe Research Team, Brueggeman L, Breen G, Bulik CM, Arenas E, Hjerling-Leffler J, Sullivan PF.
Published in Nature Genetics.
Article PDF Supplementary material PDF Supplementary tables

2019

Probabilistic cell typing enables fine mapping of closely related cell types in situ.
Qian X, Harris KD, Hauling T, Nicoloutsopoulos D, Muñoz-Manchado AB, Skene N, Hjerling-Leffler J, Nilsson M.
Published in Nature Methods.
Article PDF Supplementary material PDF

2018

Genetic identification of brain cell types underlying schizophrenia.
Skene NG, Bryois J, Bakken TE, Breen G, Crowley JJ, Gaspar HA, Giusti-Rodriguez P, Hodge RD, Miller JA, Muñoz-Manchado AB, O'Donovan MC, Owen MJ, Pardiñas AF, Ryge J, Walters JTR, Linnarsson S, Lein ES; Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Sullivan PF, Hjerling-Leffler J.
Published in Nature Genetics.
Article PDF Supplementary material PDF Supplementary table 4
Data and Code

Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq.
Muñoz-Manchado AB, Bengtsson Gonzales C, Zeisel A, Munguba H, Bekkouche B, Skene NG, Lönnerberg P, Ryge J, Harris KD, Linnarsson S, Hjerling-Leffler J.
Published in Cell Reports.
Article PDF Supplementary material

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics.
Harris KD, Hochgerner H, Skene NG, Magno L, Katona L, Bengtsson Gonzales C, Somogyi P, Kessaris N, Linnarsson S, Hjerling-Leffler J.
Published in PLoS Biology.
Article PDF Supplementary material

2016

Disentangling Neural Cell Diversity Using Single-Cell Transcriptomics.
Poulin JF, Tasic B, Hjerling-Leffler J, Trimarchi JM, Awatramani R.
Review published in Nature Neuroscience.
Article PDF

2015

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Zeisel A, Muñoz-Manchado AB, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S.
Published in Science.
Article PDF Supplementary material PDF
Browse the data in Geneuron

BCL11B/CTIP2 is highly expressed in GABAergic interneurons of the mouse somatosensory cortex.
Nikouei K, Muñoz-Manchado AB, Hjerling-Leffler J.
Published in Journal of Chemical Neuroanatomy.
Article PDF

2014

Novel Striatal GABAergic Interneuron Populations Labeled in the 5HT3aEGFP Mouse.
Muñoz-Manchado AB, Foldi C, Szydlowski S, Sjulson L, Farries M, Wilson C, Silberberg G, Hjerling-Leffler J.
Published in Cerebral Cortex.
Article PDF Supplementary data